diff --git a/soh/macosx/soh-macos.sh.in b/soh/macosx/soh-macos.sh.in
index 177e309f4..0983f63b1 100755
--- a/soh/macosx/soh-macos.sh.in
+++ b/soh/macosx/soh-macos.sh.in
@@ -219,12 +219,14 @@ if [ ! -e "$SHIP_HOME"/oot.otr ] || [ ! -e "$SHIP_HOME"/oot-mq.otr ]; then
 			*)
 				osascript -e 'display notification "One or more invalid ROM provided" with title "Ship Of Harkinian"'
 				rm -r "$ASSETDIR"
+				cd "$SNAME"
 				continue;
 		esac
 
 		# Only generate OTR if we don't have on of this type yet
 		if [ -e "$SHIP_HOME"/"$OTRNAME" ]; then
 			rm -r "$ASSETDIR"
+			cd "$SNAME"
 			continue;
 		fi
 
@@ -234,6 +236,7 @@ if [ ! -e "$SHIP_HOME"/oot.otr ] || [ ! -e "$SHIP_HOME"/oot-mq.otr ]; then
 			osascript -e 'display notification "OTR successfully generated" with title "Ship Of Harkinian"'
 			cp "$ASSETDIR"/oot.otr "$SHIP_HOME"/"$OTRNAME"
 			rm -r "$ASSETDIR"
+			cd "$SNAME"
 		fi
 	done
 
@@ -243,6 +246,8 @@ if [ ! -e "$SHIP_HOME"/oot.otr ] || [ ! -e "$SHIP_HOME"/oot-mq.otr ]; then
 	fi
 fi
 
+cd "$SNAME"
+
 arch_name="$(uname -m)"
 launch_arch="arm64"
 if [ "${arch_name}" = "x86_64" ] && [ "$(sysctl -in sysctl.proc_translated)" != "1" ]; then
diff --git a/soh/soh/Extractor/Extract.cpp b/soh/soh/Extractor/Extract.cpp
index 4769c48f6..d4b524474 100644
--- a/soh/soh/Extractor/Extract.cpp
+++ b/soh/soh/Extractor/Extract.cpp
@@ -225,7 +225,7 @@ void Extractor::GetRoms(std::vector<std::string>& roms) {
     //}
 #elif unix
     // Open the directory of the app.
-    DIR* d = opendir(".");
+    DIR* d = opendir(mSearchPath.c_str());
     struct dirent* dir;
 
     if (d != NULL) {
@@ -248,7 +248,7 @@ void Extractor::GetRoms(std::vector<std::string>& roms) {
     }
     closedir(d);
 #else
-    for (const auto& file : std::filesystem::directory_iterator("./")) {
+    for (const auto& file : std::filesystem::directory_iterator(mSearchPath)) {
         if (file.is_directory())
             continue;
         if ((file.path().extension() == ".n64") || (file.path().extension() == ".z64") ||
@@ -297,7 +297,7 @@ bool Extractor::GetRomPathFromBox() {
     }
     mCurrentRomPath = nameBuffer;
     #else
-    auto selection = pfd::open_file("Select a file", ".", { "N64 Roms", "*.z64 *.n64 *.v64" }).result();
+    auto selection = pfd::open_file("Select a file", mSearchPath, { "N64 Roms", "*.z64 *.n64 *.v64" }).result();
 
     if (selection.empty()) {
         return false;
@@ -430,10 +430,12 @@ bool Extractor::ManuallySearchForRomMatchingType(RomSearchMode searchMode) {
     return true;
 }
 
-bool Extractor::Run(RomSearchMode searchMode) {
+bool Extractor::Run(std::string searchPath, RomSearchMode searchMode) {
     std::vector<std::string> roms;
     std::ifstream inFile;
 
+    mSearchPath = searchPath;
+
     GetRoms(roms);
     FilterRoms(roms, searchMode);
 
diff --git a/soh/soh/Extractor/Extract.h b/soh/soh/Extractor/Extract.h
index 4ff7cb92f..ce4008fbe 100644
--- a/soh/soh/Extractor/Extract.h
+++ b/soh/soh/Extractor/Extract.h
@@ -28,6 +28,7 @@ enum class RomSearchMode {
 class Extractor {
     std::unique_ptr<unsigned char[]> mRomData = std::make_unique<unsigned char[]>(MB64);
     std::string mCurrentRomPath;
+    std::string mSearchPath;
     size_t mCurRomSize = 0;
 
     bool GetRomPathFromBox();
@@ -58,7 +59,7 @@ class Extractor {
     static void ShowErrorBox(const char* title, const char* text);
     bool IsMasterQuest() const;
 
-    bool Run(RomSearchMode searchMode = RomSearchMode::Both);
+    bool Run(std::string searchPath, RomSearchMode searchMode = RomSearchMode::Both);
     bool CallZapd(std::string installPath, std::string exportdir);
     const char* GetZapdStr();
     std::string Mkdtemp();
diff --git a/soh/soh/OTRGlobals.cpp b/soh/soh/OTRGlobals.cpp
index 7f0d8c5d6..1199a7e99 100644
--- a/soh/soh/OTRGlobals.cpp
+++ b/soh/soh/OTRGlobals.cpp
@@ -890,7 +890,7 @@ void DetectOTRVersion(std::string fileName, bool isMQ) {
             }
 
             Extractor extract;
-            if (!extract.Run(isMQ ? RomSearchMode::MQ : RomSearchMode::Vanilla)) {
+            if (!extract.Run(LUS::Context::GetAppDirectoryPath(appShortName), isMQ ? RomSearchMode::MQ : RomSearchMode::Vanilla)) {
                 Extractor::ShowErrorBox("Error", "An error occured, no OTR file was generated.\n\nExiting...");
                 exit(1);
             }
@@ -932,7 +932,8 @@ extern "C" void InitOTR() {
 #elif defined(__WIIU__)
     LUS::WiiU::Init(appShortName);
 #endif
-   #ifdef _WIN32
+
+#ifdef _WIN32
     char* tempVar = getenv("TEMP");
     std::filesystem::path tempPath;
     try {
@@ -985,7 +986,7 @@ extern "C" void InitOTR() {
         bool generatedOtrIsMQ = false;
         if (Extractor::ShowYesNoBox("No OTR Files", "No OTR files found. Generate one now?") == IDYES) {
             Extractor extract;
-            if (!extract.Run()) {
+            if (!extract.Run(LUS::Context::GetAppDirectoryPath(appShortName))) {
                 Extractor::ShowErrorBox("Error", "An error occured, no OTR file was generated.\n\nExiting...");
                 exit(1);
             }
@@ -996,7 +997,7 @@ extern "C" void InitOTR() {
         }
         if (Extractor::ShowYesNoBox("Extraction Complete", "ROM Extracted. Extract another?") == IDYES) {
             Extractor extract;
-            if (!extract.Run(generatedOtrIsMQ ? RomSearchMode::Vanilla : RomSearchMode::MQ)) {
+            if (!extract.Run(LUS::Context::GetAppDirectoryPath(appShortName), generatedOtrIsMQ ? RomSearchMode::Vanilla : RomSearchMode::MQ)) {
                 Extractor::ShowErrorBox("Error", "An error occured, an OTR file may have been generated by a different step.\n\nContinuing...");
             } else {
                 extract.CallZapd(installPath, LUS::Context::GetAppDirectoryPath(appShortName));